PNAS

Unified molecular approach for spatial epigenome, transcriptome, and cell lineages

Contributed by Howard Y. Chang; received November 19, 2024; accepted February 20, 2025; reviewed by Jellert Gaublomme and David A. Quigley The spatial organization of cells within tissues plays a ...
Frontiers

CapMux: a Snakemake pipeline for early demultiplexing of split-pool scRNA-seq data into sample-resolved outputs

Single-cell RNA sequencing methods based on split-pool combinatorial barcoding enable high-throughput profiling, yet sample identity is often encoded during early barcoding steps rather than through ...
Yahoo Finance

10x Genomics Acquires Proteintech Genomics, a Division Within Proteintech Group

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GitHub

Routes 10x Chromium FASTQs through QC, STARsolo cell counting, Scanpy QC filtering, and Leiden clustering — all locally, with open-source tools, via natural language in ...

ngs-scrna-plugin is a TARVIA-lab tool for guided, AI-assisted single-cell RNA-seq analysis. From raw 10x Chromium FASTQs to annotated UMAP clusters — ask Claude Code in plain English. "I have 10x v3 ...
IEEE

SCREADER: Prompting Large Language Models to Interpret scRNA-seq Data

Abstract: Large language models (LLMs) have demonstrated remarkable advancements, primarily due to their capabilities in modeling the hidden relationships within text sequences. This innovation ...